rs33540715 SNP Detail

Summary

• ID
  rs33540715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:135721346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGCTGG TGCCCCGTCT
  CATCTCTCTT TACATATTTG TCTGAGTTTG GGGTAAGCCA GGAGCTACTG TAAGTTCCTG
  TGAATAAACT GGAAGCAGGG ATGGAGAGGC GCGAGCAGAC ATTTTGCAGA CACACCCGTA
  TCTGGAGACA CTGATAAGCA TCGGGCCCTG GAGAGGGTCC TGTGCAGGTG AGAGTCCTGG
  Y
  TGAGGCCTTC TTGCCTGTCT TGGCCTTCTG GGGACAAGCT AGGGTCTGCT TTAAAGGGAA
  ATCAGGAAAT GGTACCTAAT CTATCCCAGG GTACTGAGAA GGAAGCATGC AGAATGTCCA
  CTTGATGAGA CAGATAGATA AGGAAGGACA TTTGGAAATA AGAATCAAAG CTGAATAGAA
  AATGCTAAGA GGTTAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47310490	NES11528794	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33540715					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47310490	NES11528794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:135721346 () rs orientation: forward

Symbol	Name	Function Class
D7Mit290	DNA segment, Chr 7, Massachusetts Institute of Technology 290	234 bp distal
Rr381537	regulatory region 381537	372 bp upstream