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rs33539866 SNP Detail
Summary
  • ID
    rs33539866
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:135720446 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGTTTTGTT AGGGTTTGCT
    GTACTTTTCA CCTTGACATT TATGCTAAAA ATTTAGAGTG TTTGATCTTT CCCACTCTGC
    TCCCTTCTTC ACTCAATGGG GAGGATAATA AAACCTTCGT GATAGTTGTG AAAAGAGTGG
    GGGGAAAGTC AACTTTAGAG ATGCTTCCCC ATAGCTCATT GCAAGGCAAA TGCCATTTTA
    Y
    GCAGTGGGAA AATCCTTCAG GGGTAGATAG GAGTAATTCT GGAAAGGCCA AAGCCTGTGA
    TTTTGATCAC TTAAATTAAA AATGCAATCG TTCTGCACAC ACAATAGTCC AAGCCTGTGT
    GGCTAGTTGC CTTTATTTGG ATAAGGTAGT ACAATACATA TTTCTGTGGC TTTCTCTGGA
    AAGAAAATGT CTGTACTCAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47310481 NES11528791 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33539866 SNP T T T T T T C T T T T T T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47310481 NES11528791 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:135720446 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D7Mit290 DNA segment, Chr 7, Massachusetts Institute of Technology 290 547 bp proximal
Rr381537 regulatory region 381537 1272 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory