rs33539120 SNP Detail

Summary

• ID
  rs33539120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:50517170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCATCCC TGTGGGAAGA
  GGCTGTTTAA GCCACAGCCA ACCCTACGAA AGTCCTCGGG TGTCATCAGC TCCAATTGGC
  CAGACTAGTC ACCTGGCTAT TCCGTAACCA ATCACTGTGT CCAAGCTAGT GTGACGTTCT
  GATTGGCCAG TCCTGAGTCA CATGCTCACC CAGGCTGAAG ATGAAATTTC TTTCTTTCAA
  R
  CCACAAAGAC TGAGAATAAA GGTAGGGCAA GGGTCAGCAA GGCAGGTCAG TCATCAGATG
  CTGGCTAAAG CCAGCCAGGG AATCCTGATA AAGCAGGAAA TGACTTTAGG AGGACACGAC
  TCACAGGGCA GAAGGGGCAG ACAGGGAGCC TGGCCCAAGC TGCTTCCTAT CCCTTTGTCC
  AGAGAAAACG TAAATTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39547982	mCV23756384	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss145744630	ENSMUSSNP2428383	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33539120					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:50517170 () rs orientation: forward

Symbol	Name	Function Class
D17Mit216	DNA segment, Chr 17, Massachusetts Institute of Technology 216	1232 bp proximal
Gm37173	predicted gene, 37173	within coordinates
Gm64618	predicted gene, 64618	144 bp upstream