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rs33539058 SNP Detail
Summary
  • ID
    rs33539058
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:135719757 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACTTTTGG TATAGCATTG
    GAAATGTAAA TGAGCTAAAT ACCTAATAAA AAATGGAAAA AAAAGAAGAA AAAAAAATTA
    AGATGGCTAC AATCTAAGCC ATGCTGCGTT CAGTTCTCAC TGTACATGAG AGGAGTCCTA
    TTCAGAGCTT GGTCCTGACA CATGTCCCAG AGAACTTCAG TCTGCTGCCA CGTTTTCAGC
    W
    CAACCTCGTC TATCTCAAGG AAGCTCTGCA AATCAGCTAG GCAAATAGAC AAGCATGAAA
    ATTTCAGGAA ATAATAAACA AAATGTAAAG GTAACTCATC ATGTTTGAAC TGGAAGACAA
    ATGGGATGTG AATCCCCAAT TCCACCTTCT TGGCTCCTTC CACTTCTTTC TTACACATCA
    CCTGGTTTCT TGCTATCCTG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47310472 NES11528788 PERLEGEN MM_PANEL2 f SNP A A A A A A T A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33539058 SNP A A A A A A T A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47310472 NES11528788 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:135719757 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D7Mit290 DNA segment, Chr 7, Massachusetts Institute of Technology 290 1236 bp proximal
Rr381537 regulatory region 381537 1961 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory