rs33539058 SNP Detail

Summary

• ID
  rs33539058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:135719757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTTTGG TATAGCATTG
  GAAATGTAAA TGAGCTAAAT ACCTAATAAA AAATGGAAAA AAAAGAAGAA AAAAAAATTA
  AGATGGCTAC AATCTAAGCC ATGCTGCGTT CAGTTCTCAC TGTACATGAG AGGAGTCCTA
  TTCAGAGCTT GGTCCTGACA CATGTCCCAG AGAACTTCAG TCTGCTGCCA CGTTTTCAGC
  W
  CAACCTCGTC TATCTCAAGG AAGCTCTGCA AATCAGCTAG GCAAATAGAC AAGCATGAAA
  ATTTCAGGAA ATAATAAACA AAATGTAAAG GTAACTCATC ATGTTTGAAC TGGAAGACAA
  ATGGGATGTG AATCCCCAAT TCCACCTTCT TGGCTCCTTC CACTTCTTTC TTACACATCA
  CCTGGTTTCT TGCTATCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47310472	NES11528788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33539058					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47310472	NES11528788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:135719757 () rs orientation: forward

Symbol	Name	Function Class
D7Mit290	DNA segment, Chr 7, Massachusetts Institute of Technology 290	1236 bp proximal
Rr381537	regulatory region 381537	1961 bp upstream