rs33538804 SNP Detail

Summary

• ID
  rs33538804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153269733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGGTTG TTTGTAGAGT TTGGTGGTGG CTTTTTGTGC
  AGTGCTAGGA ATGGAACCCA GAGCTTCATG TATGCTAGGC AAAAACATGA ATTGTAACAA
  Y
  GTATTGTAAA GTCAGCTGCA GTGGTAGGTA CATCCTATAG CCCCACTATT ATAAAAGCTG
  AGGCAGGAGT ATCAGCTCTG ATTACGCATA GGAAGTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45291101	mCV22912935	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147993462	ENSMUSSNP2446471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33538804					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153269733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567636	regulatory region 567636			1211 bp distal
Rr567637	regulatory region 567637			156 bp distal
Rr567638	regulatory region 567638			720 bp proximal