rs33537460 SNP Detail

Summary

• ID
  rs33537460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152660737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTAATAA ATACTGTTTT
  GGTCTGGCTC TGAAATATAC CTCAAAAACG TATGTGTTAG CCAGGCACAT TTTGTGATCC
  CAGGACTTTC CAGGCAGGAG GATTGCAGTA AGTTTCAAGT TAGTTTGGAC TACAGAGTGA
  GACTGTCTCA AAACAAAACC AAAACCCCCA GACCTTTTGT GTTGAAGACA TGGTCCCTAA
  Y
  GCAACAGTGT TCTGACGCAG GATCTTCAGG AAGGTAATTG GATGCACTCC GAGTGCAGGG
  CAGTCAAGCG TTTACTGACT GACTGGGCTC AAACCATTTT ATTCAGAGGC TTGAAAGGTC
  TGCTCAACCT GCTAGCCCCG GCATGGCAAA TATTCCAGAC CTCTTCTCAT CATTAAAGAG
  CAAATTCGTA ACTTAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45290555	mCV27575763	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147974927	ENSMUSSNP2168330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33537460					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152660737 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			620 bp distal
Rr374094	regulatory region 374094			873 bp upstream
Rr567481	regulatory region 567481			within coordinates
Rr567482	regulatory region 567482			920 bp proximal