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rs33536236 SNP Detail
Summary
  • ID
    rs33536236
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:133530342 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTGAGCTG GCCACCTAGA
    TTCCATGGCT CAAGGAGAGA ATCTACTCAT CAAAGTTGTC TTCCGACCTA CACAGATGGC
    CACGACACCC GTATACATAG TGTATGTGCA TATACAGACA GACAGACAAA CACCCACACA
    CCAATTGGTT TCCACATGGA GAACTGATTC TTGAAAGCTG TTCCAACCTC AGTATTTCTG
    Y
    TATGTCGTCA GCAAGCACAT CCTCATCAGA GACCCAGAAG AAGAAAGCTA GATAGTGATG
    GCTCACAACG GCAGCACTCA GGAGGCAGAG GCAAGTGATG CTGTGAGTTC AAGGCCAACC
    TGGTCCAGAG AGTTCTAGGA TGGCCAGAAA CGTACAACGC TGTCTCAGAA AACAAACAAA
    AAAAACTAAC AAAACAAACA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49497552 NES12877516 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33536236 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49497552 NES12877516 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:133530342 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm23939 predicted gene, 23939 1249 bp downstream
Snrpe small nuclear ribonucleoprotein E 1267 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory