rs33536236 SNP Detail

Summary

• ID
  rs33536236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133530342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAGCTG GCCACCTAGA
  TTCCATGGCT CAAGGAGAGA ATCTACTCAT CAAAGTTGTC TTCCGACCTA CACAGATGGC
  CACGACACCC GTATACATAG TGTATGTGCA TATACAGACA GACAGACAAA CACCCACACA
  CCAATTGGTT TCCACATGGA GAACTGATTC TTGAAAGCTG TTCCAACCTC AGTATTTCTG
  Y
  TATGTCGTCA GCAAGCACAT CCTCATCAGA GACCCAGAAG AAGAAAGCTA GATAGTGATG
  GCTCACAACG GCAGCACTCA GGAGGCAGAG GCAAGTGATG CTGTGAGTTC AAGGCCAACC
  TGGTCCAGAG AGTTCTAGGA TGGCCAGAAA CGTACAACGC TGTCTCAGAA AACAAACAAA
  AAAAACTAAC AAAACAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49497552	NES12877516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33536236					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49497552	NES12877516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133530342 () rs orientation: forward

Symbol	Name	Function Class
Gm23939	predicted gene, 23939	1249 bp downstream
Snrpe	small nuclear ribonucleoprotein E	1267 bp downstream