rs33531643 SNP Detail

Summary

• ID
  rs33531643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCCTCT TTCTTAAAGT
  AGTAACATTT GAAAGCTGTT TCTTTCCAAA GCCTCTACTG CCGTTTCCCT CATTAGCTGA
  CTTTTAACTA AATCTGTGCA CATACAGCAC AGGGTCTGGA AACTAGCACA CATCCTTAAA
  TAACCTTGGC ACGTATTTCT TGTTATGTAG GCTTACTAGA CTGACATAAT TTTCATTTTA
  Y
  ACTCATGTTT TAAGCTACGA GTACCCTGGT ATTGGTCAGT TAGAGTATTT GCTTAGCATG
  TGCCCTGGGT TTTTCCCTAG CACTGCAACA AGCACATAGT TAGGGAGGAA ACCAGCTCTA
  ATATGCCATT CAGTGTGTGT GAATATAAAT GGATGGAGTG TGTGAGAATT TCAGTATTTA
  TATACATACA TATATGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46825093	NES10846242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33531643					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825093	NES10846242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402730 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	374 bp downstream
Rr397615	regulatory region 397615	1476 bp upstream
Rr573976	regulatory region 573976	within coordinates
Rr573977	regulatory region 573977	1323 bp proximal
Rr573978	regulatory region 573978	1588 bp proximal