rs33531640 SNP Detail

Summary

• ID
  rs33531640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTACTT TCTTGACAAC
  AGGTAAGTAT ATTTTTATGC TGTAGTTTCA GATCCTCTTT CTTAAAGTAG TAACATTTGA
  AAGCTGTTTC TTTCCAAAGC CTCTACTGCC GTTTCCCTCA TTAGCTGACT TTTAACTAAA
  TCTGTGCACA TACAGCACAG GGTCTGGAAA CTAGCACACA TCCTTAAATA ACCTTGGCAC
  R
  TATTTCTTGT TATGTAGGCT TACTAGACTG ACATAATTTT CATTTTACAC TCATGTTTTA
  AGCTACGAGT ACCCTGGTAT TGGTCAGTTA GAGTATTTGC TTAGCATGTG CCCTGGGTTT
  TTCCCTAGCA CTGCAACAAG CACATAGTTA GGGAGGAAAC CAGCTCTAAT ATGCCATTCA
  GTGTGTGTGA ATATAAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46825090	NES10846239	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33531640					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825090	NES10846239	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402682 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	422 bp downstream
Rr397615	regulatory region 397615	1524 bp upstream
Rr573976	regulatory region 573976	within coordinates
Rr573977	regulatory region 573977	1371 bp proximal
Rr573978	regulatory region 573978	1636 bp proximal