rs33531634 SNP Detail

Summary

• ID
  rs33531634
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTTTGC ATATTACTTT
  CTTGACAACA GGTAAGTATA TTTTTATGCT GTAGTTTCAG ATCCTCTTTC TTAAAGTAGT
  AACATTTGAA AGCTGTTTCT TTCCAAAGCC TCTACTGCCG TTTCCCTCAT TAGCTGACTT
  TTAACTAAAT CTGTGCACAT ACAGCACAGG GTCTGGAAAC TAGCACACAT CCTTAAATAA
  M
  CTTGGCACGT ATTTCTTGTT ATGTAGGCTT ACTAGACTGA CATAATTTTC ATTTTACACT
  CATGTTTTAA GCTACGAGTA CCCTGGTATT GGTCAGTTAG AGTATTTGCT TAGCATGTGC
  CCTGGGTTTT TCCCTAGCAC TGCAACAAGC ACATAGTTAG GGAGGAAACC AGCTCTAATA
  TGCCATTCAG TGTGTGTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46825084	NES10846233	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33531634					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825084	NES10846233	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402673 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	431 bp downstream
Rr397615	regulatory region 397615	1533 bp upstream
Rr573976	regulatory region 573976	within coordinates
Rr573977	regulatory region 573977	1380 bp proximal
Rr573978	regulatory region 573978	1645 bp proximal