rs33531509 SNP Detail

Summary

• ID
  rs33531509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19371505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTATGA GATTTCCTTT
  TAAAATTATA GCACAATTAC AGCAGCAAGA GAGGGGAGAA AATACCTTCA AGTGCCTTTT
  CAATCCCCAG ATTCTCTATA CATTTGTATT TTCCATGGAT ATTTACCAAA TAGCCACAAG
  TGTTTGGATA TTCTCCTAGG TATCTAAAAT AAGCCAGAGA GTGGTCCCTG CCTGAATGAC
  R
  TCACATAGTA ATGGGGGCAT GTGTAAGTAA GTAAGTGTGG GATTGTATAA CTTGACATGG
  TGTTACTAGG GGCTTTATTT ACTCGGCTTT TTGTCACTAG CACATGACTA TGATAGAGAA
  GCTTACGAGG AGAACAATGG AAAGATCTGT GTGGATTACA GTTTTGCTGT TTTCATTCCA
  TGGTTGTTTA GACTATTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss46824877	NES10848069	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs33531509					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824877	NES10848069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19371505 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	531 bp downstream
Rr573972	regulatory region 573972	1556 bp distal
Rr573973	regulatory region 573973	1647 bp distal
Rr573974	regulatory region 573974	1621 bp proximal