rs33530529 SNP Detail

Summary

• ID
  rs33530529
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATAATT GATCACTTAT
  GAAGTCTTAC AAATCCAATT TTATTGATGG CTCTCTTGAG CCTGGCATTA AAGCCCATGT
  GGCCTCTATG GTAGGTGGTT GTTGCTGGGG ACAGAGTCTG CTTTTTTCTT TCTGAGCTGC
  TCAGCAAAGG TTCCTTCTGG GGACACTATG GGTGAGTAGG CTTGGCAGGT TCTCTTGAAC
  S
  CTCTCTTCTC AGAGCTTGAA CTTACAAAAG GATTTCTGTT GTCATTTCTC TATAGGAAAC
  TTCTGAAATA AAGTCCAGAT TAAGTTTTTC TGTTCTTTCA AGGGTGCAGT TTCTGTCTTA
  TAGGCTTCCC CATGCCCATA GCTGGGGAAG GGCACATCTC CTATCAGAAA GTTATATGCC
  TTACTTCTCC TTTAACCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46825075	NES10846317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33530529					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825075	NES10846317	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402038 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	1066 bp downstream
Rr573976	regulatory region 573976	371 bp proximal