rs33528424 SNP Detail

Summary

• ID
  rs33528424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19367224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCTCAA GTATCATAGT
  GAGTTCAAAA CCAGGCAGAC TACATAGTGA GATTCTATCT CAAACAACAA CAACAAATTT
  GAGTACCTCT ACACAAAGTT GATACTGGTA AAATTTCATT GAGTAAAATA TACCACATTT
  AGTAATATCC AAATATTTGA TTAATTAAAT AATAAGACTC ACTACTAAAT AGGCAACTAA
  R
  CAGTACATTT CCAGTAAGGT CTATTTCAGG GTCCTTGTTT GAGCCAAGAG CCCTGGCAGG
  TATTTTATAT ACAGTATTTT TACCCAACAC ATAGTAATTT GATCTTATTT ATACAAATGA
  GCAGTCCCTT TCCAAAACTA AGTCACTTCC TTAGTAAACG CTGGTCTGAC TTGAGAGCCA
  TGTCTTCCAC CATAGCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss46824832	NES10848303	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs33528424					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824832	NES10848303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19367224 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	1234 bp downstream
Cpgi13002	CpG island 13002	1072 bp distal
Gm66414	predicted gene, 66414	within coordinates
Pde7a	phosphodiesterase 7A	1738 bp upstream
Rr573969	regulatory region 573969	1749 bp distal
Rr573970	regulatory region 573970	1413 bp distal
Rr573971	regulatory region 573971	105 bp distal
Tssr28512	transcription start site region 28512	1587 bp downstream
Tssr28513	transcription start site region 28513	1565 bp downstream
Tssr32696	transcription start site region 32696	1797 bp upstream
Tssr32697	transcription start site region 32697	1746 bp upstream
Tssr32698	transcription start site region 32698	1716 bp upstream
Tssr32699	transcription start site region 32699	1682 bp upstream
Tssr32700	transcription start site region 32700	1657 bp upstream
Tssr32701	transcription start site region 32701	847 bp upstream