rs33527631 SNP Detail

Summary

• ID
  rs33527631
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19366945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCACTG CTTTTGAAAT
  CCTAATTAGT CCCTGTAGTA GATGTGTTAA GCATCTCACT TGGGATTACA CCGAGCACTG
  TGGGCCACTT AGTCTTCAGA AAGTCGTTTA TCAGCTGACT AAATTGGAAG TAGATTCCTA
  GAAACAAACT TGCCCTACAC CTAGGACAGA TAAATCTCAA GAACTAACCT CAAGTGATAT
  S
  TACGGACATG GTGGTACAAA CCTGTAATCG CTGCCTTTGG AAAGCTAGGG CAACACGATG
  AAGAGTTGAG AGTTAAAGAT AAGCTCAAGT ATCATAGTGA GTTCAAAACC AGGCAGACTA
  CATAGTGAGA TTCTATCTCA AACAACAACA ACAAATTTGA GTACCTCTAC ACAAAGTTGA
  TACTGGTAAA ATTTCATTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss46824829	NES10848454	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs33527631					SNP	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824829	NES10848454	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19366945 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	955 bp downstream
Cpgi13002	CpG island 13002	793 bp distal
Gm66414	predicted gene, 66414	within coordinates
Pde7a	phosphodiesterase 7A	1459 bp upstream
Rr573969	regulatory region 573969	1470 bp distal
Rr573970	regulatory region 573970	1134 bp distal
Rr573971	regulatory region 573971	within coordinates
Tssr28511	transcription start site region 28511	1922 bp downstream
Tssr28512	transcription start site region 28512	1308 bp downstream
Tssr28513	transcription start site region 28513	1286 bp downstream
Tssr32696	transcription start site region 32696	1518 bp upstream
Tssr32697	transcription start site region 32697	1467 bp upstream
Tssr32698	transcription start site region 32698	1437 bp upstream
Tssr32699	transcription start site region 32699	1403 bp upstream
Tssr32700	transcription start site region 32700	1378 bp upstream
Tssr32701	transcription start site region 32701	568 bp upstream