rs33523460 SNP Detail

Summary

• ID
  rs33523460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172389115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG TGTCTCACAT TTGGGCATTT
  R
  GGGTGCCGGT GAGCGCGCGC GCGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45288473	mCV23507037	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148318875	ENSMUSSNP1999225	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320619376	CHEV_2_172372695	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33523460					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172389115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12822	CpG island 12822	1080 bp distal
Cpgi12823	CpG island 12823	within coordinates
Cpgi12824	CpG island 12824	1492 bp proximal
Rr571697	regulatory region 571697	1908 bp proximal
Tssr21961	transcription start site region 21961	1510 bp downstream
Tssr21962	transcription start site region 21962	1467 bp downstream
Tssr21963	transcription start site region 21963	996 bp downstream
Tssr21964	transcription start site region 21964	971 bp downstream
Tssr21965	transcription start site region 21965	963 bp downstream