rs33520075 SNP Detail

Summary

• ID
  rs33520075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90018468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTA GGGAGGTTAC CGTTGTTGTA
  Y
  TCACCTTAAT CCCGAGAGAA TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48323007	NES12186599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33520075					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323007	NES12186599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90018468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	816 bp distal
Rr519073	regulatory region 519073	within coordinates
Rr519074	regulatory region 519074	786 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139276	transcription start site region 139276	1894 bp downstream
Tssr139277	transcription start site region 139277	1043 bp downstream
Tssr139278	transcription start site region 139278	991 bp downstream
Tssr139279	transcription start site region 139279	970 bp downstream
Tssr139280	transcription start site region 139280	948 bp downstream
Tssr139281	transcription start site region 139281	939 bp downstream
Tssr139282	transcription start site region 139282	855 bp downstream
Tssr139283	transcription start site region 139283	809 bp downstream