rs33518111 SNP Detail

Summary

• ID
  rs33518111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16550601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAGCAT GCAAGAGATT
  CGAGGATGCC TGTTCAGAAG AACGAACAGG TAAATTCTTT GAAAAATCTT ACCATCTATA
  TTAACGCACA CTTTAAAACT CCGTGCATGC TTCAGTTTGA TGTTTTGAAG CAAATAAGGC
  GACAGCAAAA TCAAAAAGGA AAAACAGCAC GGTAGTGCAT GTTGCCACAG GAATCTTATG
  W
  GAGACACAGG AGCAAAATTA ACGCGCTGGA GCCATCTTCT GACTGCACGG GACTGCGGCA
  GCTCACAATG GTTGCTGTGC TAATAAGTTA GGGGCAGATG CTTGCCACAG ACAAGTCAGG
  CTTTTATATG CTCTTGCTTT TCCCTAATGA CCTGCCTTAA TACAGCCTAC ACTTTGGTTC
  TGTCTACTCT CCTTCTTTCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47807712	NES11714155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33518111					SNP	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47807712	NES11714155	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16550601 () rs orientation: forward

Symbol	Name	Function Class
Gm36503	predicted gene, 36503	within coordinates
Gm67370	predicted gene, 67370	within coordinates
Rr626711	regulatory region 626711	205 bp distal
Rr626712	regulatory region 626712	within coordinates
Rr626713	regulatory region 626713	1776 bp proximal