rs33518109 SNP Detail

Summary

• ID
  rs33518109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16550066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCGAAAA GACACACACA
  TGCTTTGCCC ATTAACGCCT GCAATACCTT CGCGGATAAT CACACAGTTC CTTATCATTT
  TTTTTATGCA CTTAGATAGC AGAGGTATGA CCTCCAAAGT CCCTAATTAG GCATTAAATG
  CTATGCATAG TTCTCTTTTA GTAAACTATT TCAAGCTGTG ACTTCTTAAT TGGATCAAAC
  R
  CCCATTTTTT TGTGTTTTGA TCAATCAATA TTTGTCAAGA AGGTACATTT AGAATTTGTC
  AGGTATTGGG GACTGACAAT TACTCAGACA TCTCCAAAAG ACAGTGACTT CAGAAAGGGT
  TCCAGGCCTG ACTATTACCT ATTAGCACCG TGTCCTTATT TTGCTCAGGC TTTCACAAAC
  CTTAGCTCCT CAAGGACGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47807710	NES11714154	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33518109					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47807710	NES11714154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16550066 () rs orientation: forward

Symbol	Name	Function Class
Gm36503	predicted gene, 36503	314 bp upstream
Gm67370	predicted gene, 67370	within coordinates
Rr626711	regulatory region 626711	224 bp proximal
Rr626712	regulatory region 626712	331 bp proximal