rs33517232 SNP Detail

Summary

• ID
  rs33517232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163934668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGACCTCAA ACTCAGAGGC CCTGCTTCTG CCTCCCGGGT GCAGAGTGTG TGCCTCATCA
  CTCTGGGTTC CTTCCCTCCC TTTTAGGCAC AGCCTCATCC TGTAGCCAAG GCTGGCCTGG
  AATTCCCTGT GTAGCTTGGT CTTGAAGCCT CCGTCTGTCA GGGCTGCTTA GAGTACAAGA
  GTGAACTAAG GACCGGCTGG GCAGGCTTAG ATTCATATTC TATCCCCATC TCAGATTCAT
  GTTTATTCAT TCATTCTGTC TGTCTGTCTG TCTGTCTGTC TGTCTGTCTC TCTCTCTCTC
  W
  CTCTCACATA CATCACACAC ACACACACAC ACCCCTCTCA AATTTGTATT TTAAAGTTTT
  ATTTTTGTGT GTTGGGTGCA GTGCCTTTGG AAAGCCAGAA GAGGGTGTTG GATCTTTTGG
  AGCTGGAGTT ATAGGTGGTT GGGAGCCACA TGGTTGTTGG GAGCCAAATT CAGGTCCTCC
  AGAAGACTAG GGAGTGTTCC TAACCACTGA GCTGGCCGGC CTGCTTGTCC TTTAGTTTCT
  AAAGTTTTTT TTTTTTTTAA GGAAAATCAA TATCTGTCTC CATCTCTCTC TGGATTTTTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45288396	mCV23179501	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33517232					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163934668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330575P09Rik	RIKEN cDNA 6330575P09 gene			387 bp downstream
Rr569556	regulatory region 569556			90 bp proximal
Rr569557	regulatory region 569557			1586 bp proximal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant