rs33515842 SNP Detail

Summary

• ID
  rs33515842
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165842388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAGTCCATGG
  TCTGCTGGGG AGAAAATTAA CCACCTGTGT TTGAGTCTCT TCACTGGGAG AGCTCAGCAG
  TGTGGTAAGA TTTGACTGAG TGTCCCACAT TTAAAACGTG ATCAGAGGAA ATGAGACTCC
  AGGTCGGCAG GCCATTGCTG GTAATCTGTT CTGTTCTCGG AAACTTTAAG ATGCGTAAAT
  K
  CCTTTCATTC TGGTGTAAAA TGTCTAAGAA GGGACGCCTT GGCCTTTTCA TAGTTTGAGA
  CACTTGGTAG TTCCCCCTTT TAAAATGTGA TGGTGATATT TCAGTGTTTA ATGTTGACAA
  TTTTGATATA AATTTGAATA TTCCCCCCCC CCCCAGAAAC TGGTTTAATA TATCCATGAG
  AAAAAAAAAA TCTATCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45287482	mCV23746352	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss148248067	ENSMUSSNP198738	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33515842					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165842388 () rs orientation: forward

Symbol	Name	Function Class
Ncoa3	nuclear receptor coactivator 3	Intron
Rr2018	regulatory region 2018	within coordinates
Rr570103	regulatory region 570103	within coordinates
Rr570104	regulatory region 570104	234 bp proximal