rs33508977 SNP Detail

Summary

• ID
  rs33508977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97297137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCGCTTT CATTTATCTG
  GGAAGAGAGA AGAGAGAGGA GAGGGAGAGA GTTCACCGCG AAGTGGATGG AAGGGGAGCC
  GGGACTATGG CACTGAGACC GGCGCAGAGC AGCTGCGCGC CCGAGGACGA ATCTCCTCCA
  GGAGGACCAG CGGGCGTCGG GAACGGCTGC GCACAGAGGA ATCAACTTGT GGCTCCAGAC
  S
  GTCCCCAACG CAGCTGGAAA TGAGATCAAA GCTGCAGTTT CATTCCAGAA GGATGAGAGG
  AGCCAGTGAT TAGAGAATTT TTTTTAACCC TCTTCATTCC TGTTTCGTTA CCCCCCCCCC
  TTTTTTCTTT AAATATATTT TTTGAATATT TTTTTTTCCT TTTTAAAATT ACCTAACACC
  ACGTCAGCCC CTTCACTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45286584	mCV23693174	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33508977					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97297137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11965	CpG island 11965			within coordinates
Gm54117	predicted gene, 54117			within coordinates
Gm75348	predicted gene, 75348			within coordinates
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561447	regulatory region 561447			313 bp distal
Rr561448	regulatory region 561448			375 bp proximal
Rr561449	regulatory region 561449			876 bp proximal
Rr561450	regulatory region 561450			1392 bp proximal
Tssr19016	transcription start site region 19016			307 bp downstream
Tssr19017	transcription start site region 19017			684 bp upstream
Tssr19018	transcription start site region 19018			747 bp upstream
Tssr19019	transcription start site region 19019			783 bp upstream
Tssr19020	transcription start site region 19020			894 bp upstream