rs33507955 SNP Detail

Summary

• ID
  rs33507955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164247884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGCCA TCATCCTAAG
  AGAAGGTGTG CGCACATGCC TGCAGCAAAG ATGTGAGCAG ACTGTGTGGA TCCTGCATGC
  CAAGGTGGCT CAGAAATCCT ATGGAAATGA GAAGCGGTAG GTGGCTCCCT ACCCCGACCC
  AGGTCTCCAC AGCCTTCAGC CCTATGCCTC CCTCCAAACC CACCACCATT TAGCTTCTTT
  R
  ACATCTTGGA GGCCTCAAGG CTGACACCTC AGCCATTGTT CAGCCAGGGT CCTGTTCCCC
  AGCCAACAAC AGCTGCCTAC TGGGATCTAG AGCAGAACTT GACAGTGGCT GTCAGATCCC
  CACATCCCCG ACCAGTATCC ATTCATTCTG CTGCGTACTA CATGTCACGC ACCAGGGTCA
  CTGCTGGGCA CTAAGCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45286841	mCV23181604	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33507955					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164247884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12657	CpG island 12657			966 bp distal
Cpgi12658	CpG island 12658			1878 bp proximal
Matn4	matrilin 4			804 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569598	regulatory region 569598			1363 bp distal
Rr569599	regulatory region 569599			860 bp distal
Rr569600	regulatory region 569600			571 bp distal
Rr569601	regulatory region 569601			1712 bp proximal
Rr569602	regulatory region 569602			1934 bp proximal
Tssr21579	transcription start site region 21579			1564 bp downstream
Tssr21580	transcription start site region 21580			667 bp downstream
Tssr27451	transcription start site region 27451			1343 bp upstream
Tssr27452	transcription start site region 27452			1140 bp upstream
Tssr27453	transcription start site region 27453			1107 bp upstream