rs33505409 SNP Detail

Summary

• ID
  rs33505409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACACAC AAGTCTATGG
  GAGTCATTCC TACTCAAACT AGCACACATA CCCAAAAGTG TCAATAAAAT GGCCACAGTG
  TGAGGCTCTG ACTAAGTGAA CGTGGGAACA GTTGATCCCA TTTCAAAACA GGACCATGGG
  CCTTAGATGA CCAGCTCCAT TCAGAGGAAC AACCAGAGAG AGGAGCAGAG ACGTGCTCCA
  R
  GAGACAGAGG AGGCACAGAG GAGACACCAC CAGCAGTGTC CCCAGGACCA GCAAAGAAGG
  CGACTTTCCC TGAGCCTGAG GACAGCTGAG AGGGAGAAAG AGTCCGAGCC CAGGAGCAGT
  GTTGGTGTGA AGGAACTGCC TGAGCAGAGG CCTAAAGGCA GTTTGTTGTG CATTGGAAGG
  AGAGAGGCCA CCAGGGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45286820	mCV23022135	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss320608502	CHEV_2_165451903	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33505409					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468323 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	482 bp proximal
Rr569966	regulatory region 569966	1545 bp proximal
Rr569967	regulatory region 569967	1659 bp proximal