rs33504774 SNP Detail

Summary

• ID
  rs33504774
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109507147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTTTAG TTAACTTGGA
  ACTGCAAATA TCTGATTCAA ATGTAAGATT TCTCTCATTC CCCCTTTCCC TCCCTCTTTT
  CCGTTCTTTT TGCTTGTGTG TGGTGTGTGT GCGTGTACAG TAGATTCATT ACTAATTATG
  AAGCTTTTTA CACAACATTC GATTTCCTAA GATTTGACTT TGTACCATTT AGAACAAGAG
  K
  ATGGAGGGAA TGTGCAGTGG GGAAAGAGGA GGTGGAAGCT GGGAGAGGGA CGGAGGTTAG
  CTAAATACCC ACAAAAATGA ATCAAGGTAA TTTCAGCTCC TCTAGTGAGG AGGATTCATT
  CTCTCGGTAT CCCTGCCTCC CTCTCTTTCC CCCCTCCCTA CCTCCTTCCC GCCCCCCTTT
  TCCACCCCGC CCCCTCCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45286184	mCV23782096	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss147203240	ENSMUSSNP3767614	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33504774					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109507147 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12033	CpG island 12033	509 bp distal
Cpgi12034	CpG island 12034	340 bp proximal
Gm45346	predicted gene 45346	211 bp upstream
Rr373669	regulatory region 373669	261 bp upstream
Rr562478	regulatory region 562478	1799 bp distal
Rr562479	regulatory region 562479	1698 bp distal
Rr562480	regulatory region 562480	895 bp distal
Rr562481	regulatory region 562481	within coordinates
Rr562482	regulatory region 562482	241 bp proximal