rs33503234 SNP Detail

Summary

• ID
  rs33503234
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTGCCTCC CAGCCCTGGG GAGGCCTGGA GCAAATGGCT
  GCAACTCACT CGGGCCTCAT TTTCACCTAC CACCCCTCCG CAACTTAGCA GCCTTTCCCC
  M
  AAGAGGAGAG GGTTAGAAAC CCAAGGCCAG ACTTATCACA GCCCCAGGCT GACAGGTGGA
  AAAACACACA AGCCAGGAGT CGGTATGCTT GCAGGTGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45286785	mCV23160820	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss147988416	ENSMUSSNP889496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33503234					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082087 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1366 bp upstream
Rr567587	regulatory region 567587	1401 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1249 bp proximal
Rr567590	regulatory region 567590	1789 bp proximal
Tssr20880	transcription start site region 20880	748 bp upstream
Tssr20881	transcription start site region 20881	762 bp upstream
Tssr20882	transcription start site region 20882	1285 bp upstream
Tssr20883	transcription start site region 20883	1335 bp upstream
Tssr20884	transcription start site region 20884	1440 bp upstream
Tssr26895	transcription start site region 26895	1176 bp downstream
Tssr26896	transcription start site region 26896	1191 bp downstream
Tssr26897	transcription start site region 26897	1235 bp downstream
Tssr26898	transcription start site region 26898	1330 bp downstream
Tssr26899	transcription start site region 26899	1542 bp downstream