rs33502311 SNP Detail

Summary

• ID
  rs33502311
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16212617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTGCT TTTTTTTTAT
  GAAATAAAAT AATTCTAACC CAATAGCAGA TAACTTTAGG AAGAAAATAT GCTCAATTGC
  ACTAAAATTA CAATAGCATG GTATTCCATT AAATTCTGTC TTTCCATTTG ACCTTTAAAC
  ACAGATATTT TGTATAATAA TAATGCTCAT ATCTTATTTT CTATGATTGC CAGTCAGGGT
  W
  TCAGAAGAAA ATAGACAACA CACCAAAATT AGGAAAGTTA AAAATTATCA TTCACTAGGA
  GATCTAAGTG CAGGAGATCT GCTATACTGT ATGGTGACTA AAACTAAGGA TAATATTAGT
  CTTGAAAAGT GCTAAGACAA TAGATGTAAA GTATTTTATC ACAGAACTGT TGCTATGTGA
  GATAATGCAT GTTTAATTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47806172	NES11721804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33502311					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47806172	NES11721804	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16212617 () rs orientation: forward

Symbol	Name	Function Class
Gm67213	predicted gene, 67213	within coordinates
Rr626702	regulatory region 626702	331 bp proximal