rs33501758 SNP Detail

Summary

• ID
  rs33501758
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103242922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCTAGA AATAATAAAG
  TGAGGATATA AAAATTACTG TGCATGATAT GTGTGTGTAT GCACACCATA CAGTTACATG
  GGAGCCAGAG GTGGTGTCAC ATTTCTCTTC CCCCATCTTT GTGTGGGTTC TGGGAAGTAA
  AAGGAGAGTG TGCAACACGG GCTTCTGCTG GCTGAGCCTC TTGGTGGTGC TAAAGTGAAA
  M
  TCCCTGAAAA AAATTACAGT TTGCTTTCAT GAGGAAGTAA TAGGAGGTAG TAAATTGAAG
  CCAGAATGCT TCACACTTTA ATGTTTCCTA TAAACTCTTT CAGTGGTGTG AATGTGTGTA
  CCTCTCCATC TGTATATGTT TCTTAAGGTT TTTTTCTTGG TTCTCTTTTG TTTGTTTTTT
  TTTTTCTTGG TTCTCTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46821968	NES10734198	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33501758					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46821968	NES10734198	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103242922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			1223 bp downstream
Rr582347	regulatory region 582347			7 bp distal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant