rs33501755 SNP Detail

Summary

• ID
  rs33501755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103241803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAAACAC AAATACGTAC
  AGATGGAGAG GCACGCATAG TCACACCTTT TTTTTTGTTT TAAAAACAAA AACAAAACTC
  AGACAAAACA TGATATCAAA AAAGAATAAA ATAATCCTCC AAAAATACCA TACCATTGTG
  TTGGCCATCT ACTGATGGGC ATGGGACTTC CCTTCGTATG GTATTCCCTG CTGCTATAGC
  Y
  TAGACAGTAA GTATTTTTTT AACAGAAAAT TTTGGGTGAG GCATGTGGCT CAATGGTATA
  GTCCTTATGT AGCATGTTCA AGGAACCGAC CTCCTTCCCT CCCTTCCTCT CTCCCTCCTT
  CCCTAAGACA GATCCTCAAT TTATAGCCCT GGCTGACCTG GAACTCACCA TGTGAGCTAA
  GTTGTCCTCC CCATTCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46821965	NES10734240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33501755					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46821965	NES10734240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103241803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			104 bp downstream
Rr582347	regulatory region 582347			1091 bp proximal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant