rs33489954 SNP Detail

Summary

• ID
  rs33489954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109719623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG CCTTGGTCAC GGTGTCTGTT
  Y
  ACAGCAGTAA AACCCTAACT AAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45284281	mCV23788753	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147205621	ENSMUSSNP5659533	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320456055	CHEV_2_109729435	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33489954					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109719623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12038	CpG island 12038	1274 bp proximal
Gm54141	predicted gene, 54141	within coordinates
Lin7c	lin-7 homolog C, crumbs cell polarity complex component	1582 bp upstream
Rr397174	regulatory region 397174	1373 bp upstream
Rr562499	regulatory region 562499	831 bp proximal
Rr562500	regulatory region 562500	978 bp proximal
Rr562501	regulatory region 562501	1534 bp proximal
Rr562502	regulatory region 562502	1586 bp proximal
Tssr19303	transcription start site region 19303	1568 bp upstream