rs33485677 SNP Detail

Summary

• ID
  rs33485677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127675222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCTCTGG GTGGCCTTTC CTTTAGGCTC TGCTCTACAC
  TTTATCTCCA TATTTGCTCC TATGAGTATT TTGTTCTCCA AGAAGGACCG AAGCACCCAC
  W
  CTTTGGTCTT CCTTCTTGAG CTTCATGTGG TCTGTGAATT GAATCCTGGT TATTTTAGGG
  CTTGTATCCA CTTATCAGTG AGTGCATACC ATGTGTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45284229	mCV22597299	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33485677					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127675222 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	1437 bp upstream
Rr397289	regulatory region 397289	1226 bp downstream
Rr564601	regulatory region 564601	1454 bp distal
Rr564602	regulatory region 564602	947 bp distal
Rr564603	regulatory region 564603	311 bp distal
Tssr26147	transcription start site region 26147	1427 bp upstream