rs33485280 SNP Detail

Summary

• ID
  rs33485280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127673063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC CTAAAGAACT GATGAAAATA
  R
  AATTGTATTT CTTGTAACAT CCGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45284422	mCV22597108	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss147542376	ENSMUSSNP3150850	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss320500797	CHEV_2_127656879	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33485280					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127673063 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12232	CpG island 12232	287 bp proximal
Rr397289	regulatory region 397289	632 bp upstream
Rr564601	regulatory region 564601	41 bp proximal
Rr564602	regulatory region 564602	706 bp proximal
Rr564603	regulatory region 564603	1827 bp proximal
Tssr26147	transcription start site region 26147	674 bp downstream