rs33480694 SNP Detail

Summary

• ID
  rs33480694
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATATTCG TTTAGTGTTC
  ATCACGTCTC CGGGGACAGT GGCATTCTAT CAGATTTGCC ATCTTAAATA TCTTGCTATA
  ATTTGCATCA TCACTGATAT TTTAGCCACT CTCAAGTCAG ATATCGAATT AACTTTACAT
  GTAAAATATT CTAGGCAAGT GCCTGTGAGG CAGAAACATG ACTCAAGGCC CAAAGGTGGG
  K
  TGCCTCTGAG CCTGGTGACC TTAGTTTAAC TCCCAGAACC CACATGCTAA AAGGAGAGAA
  AGATCCCAGT AAGCTGCCCT CTGACCTCAG TGCACACTGT GCCAAAATGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GCTCACCTTT ACTCAAATGC
  ACATCATATA CTGTACTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47803222	NES11708651	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G	G	G	G		G	G	G	G		G
ss133007035	ENSMUSSNP1625183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss321752335	CHEV_6_15741951	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33480694					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47803222	NES11708651	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791950 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	1487 bp downstream
Rr399576	regulatory region 399576	1434 bp upstream
Rr626687	regulatory region 626687	1395 bp distal
Rr626688	regulatory region 626688	1635 bp distal
Rr626689	regulatory region 626689	658 bp proximal
Tssr55016	transcription start site region 55016	1575 bp upstream
Tssr55017	transcription start site region 55017	1610 bp upstream
Tssr59879	transcription start site region 59879	1369 bp downstream