rs33479858 SNP Detail

Summary

• ID
  rs33479858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTCCC AAGCCTTCCT
  GAATTTGAGG AGAATAGTCG CTATCGCTAT ACTACAGAGC CTGGCTGGAC ATAGGAGGAG
  AGTTATAGTC CTCCTGGAAC CATATTTTGA TGCTATCATT CCCCCACCCC ATCGGGCACT
  ACTACCACAA CTCCCACCAC CCCCACAATC AACACACCAC TATCATCACA GCCATCACAC
  R
  GCTAGTACTT AGCAAGTGTC ATCTGTTAAT TCCATATTCG TTTAGTGTTC ATCACGTCTC
  CGGGGACAGT GGCATTCTAT CAGATTTGCC ATCTTAAATA TCTTGCTATA ATTTGCATCA
  TCACTGATAT TTTAGCCACT CTCAAGTCAG ATATCGAATT AACTTTACAT GTAAAATATT
  CTAGGCAAGT GCCTGTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47803216	NES11708644	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33479858					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47803216	NES11708644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791719 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	1256 bp downstream
Rr399576	regulatory region 399576	1665 bp upstream
Rr626687	regulatory region 626687	1164 bp distal
Rr626688	regulatory region 626688	1404 bp distal
Rr626689	regulatory region 626689	889 bp proximal
Tssr55016	transcription start site region 55016	1806 bp upstream
Tssr55017	transcription start site region 55017	1841 bp upstream
Tssr59879	transcription start site region 59879	1600 bp downstream