rs33479856 SNP Detail

Summary

• ID
  rs33479856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCCAGC TTTCTTGCTT
  CTGAAGAAAA CAGATAATCA TTGCACTATG GAAAACTAGA CTATTATTTT GAAAGCTTCT
  GCTATAGCCA GACACAGATT ACTTGTTTTG GGCTGGGTTT CTGTTTCATT CTTCTGCACT
  GTCTGTCTCT TAGAATTAGT TACGTTTGGT GCTTCGTCCT CTTTTGTATC TGAGCAGTTT
  Y
  TCCCAAGCCT TCCTGAATTT GAGGAGAATA GTCGCTATCG CTATACTACA GAGCCTGGCT
  GGACATAGGA GGAGAGTTAT AGTCCTCCTG GAACCATATT TTGATGCTAT CATTCCCCCA
  CCCCATCGGG CACTACTACC ACAACTCCCA CCACCCCCAC AATCAACACA CCACTATCAT
  CACAGCCATC ACACGGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47803214	NES11708643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33479856					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47803214	NES11708643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791524 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	1061 bp downstream
Rr399576	regulatory region 399576	1860 bp upstream
Rr626687	regulatory region 626687	969 bp distal
Rr626688	regulatory region 626688	1209 bp distal
Rr626689	regulatory region 626689	1084 bp proximal
Tssr59879	transcription start site region 59879	1795 bp downstream