rs33479085 SNP Detail

Summary

• ID
  rs33479085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152661439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGACAGA CTGCCAACAG
  AAAGCCTGTA GTCTCACTCA CCACTTGGTG TCCCCATCCA AGGCATTCAT TAGCATTTAC
  TTATTTAAAC TAAATGAATC CATCTTGAGG AGAGGCAGGC AGCAGCACAA GTAAGTTAGG
  GGTAACTAGC CAGACACAGG AGCAGGGCAT GTTGGGGTAG GAAGTATAGG AAGGAGGATC
  M
  GGAGTACAAG GAGATCCTCA GCAACATAAT GAAACTGAGG GCAGCAGCCT GGGATACAGG
  AGACTCTCTC AAAAGCTACC TGCCCCCAAA CAAAGCAAAA CAAAATAAAC TCCAGGCAAA
  CAGACTTGAA GTCTGACAGT CACTTCACTC TTTGTTTTAA TTTCCTCCCT GGAAATGAGG
  CTGAAAGTAA CCCATCTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45283614	mCV27575782	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33479085					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152661439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			1322 bp distal
Rr374094	regulatory region 374094			171 bp upstream
Rr567481	regulatory region 567481			505 bp distal
Rr567482	regulatory region 567482			218 bp proximal
Tssr20836	transcription start site region 20836			1749 bp upstream