rs33477815 SNP Detail

Summary

• ID
  rs33477815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17854552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAATAAT AATAAAACAA
  AGAATCACTC TACTAGAAAA AAGAGAGAAA GAAAAAGAGA GAAAGAAAAA GACAGGAGAG
  AGAGAGACAG AGAGAGAAAG AAAGGAAAGA AAGATTTTAA AATTGTTTCT TCGATGTGTG
  ATAGATTTTT CCTCAAGTCG ATAGCAAGCA CCAGTGTTCA CCTTTCAACT GTGTATAGAT
  K
  GGCTTTTAAA CGTGTCCTTT ATATTTGTGT ATCTGAATTG TGCCTAAGAG ATGCCTACTT
  CCCTTTGGAG ATTTAGAACC CATGGAAACA TGCACTTCCA CAGAAATAAT ATTCTTTCAA
  ATAGCATGTT TATGGAAAGC ACAAATACAA CACAAAGAAC AAACTACTAA TACTCTTAAT
  TAATGATTAA TCACAATAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817817	NES10864584	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33477815					SNP	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817817	NES10864584	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17854552 () rs orientation: forward

Symbol	Name	Function Class
Mir124-2hg	Mir124-2 host gene (non-protein coding)	317 bp downstream
Rr573852	regulatory region 573852	809 bp distal
Rr573853	regulatory region 573853	1941 bp distal
Rr573854	regulatory region 573854	1779 bp distal
Rr573855	regulatory region 573855	1086 bp proximal