rs33475739 SNP Detail

Summary

• ID
  rs33475739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17903753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACTGGCA ATCAAAAGCT
  GCTGATAAAG TTGTTTTCCT TTAAGAACGT TGCCCATAGT AAGATGGCTA GGGTCACATG
  GAGGACCCCA CAGCCATGAA AGTAGTTCAT GTCTGTAGAT GCTGAATTGT AAAAGTTATC
  TGATCTAATA TTATTTACAG GGTACTTTCT GCATTTTAGA CTCTTTCTAA ATTCACAACA
  Y
  TTACTTAAGC AAAATATAAG TGTTATTATA TTAATTATGT CATGCACTGG TTTTTATCTT
  CCTGTGTTCT AAAAGGATAC TCTTGATTTT TTTTAAATTC CTAACAACAA CCCTTTGAAA
  ATGAATTGTT ATTCCAACTT TGAAAACCAA ACCGAGCCAG GACTTTGAAC AAACAGAAGT
  GTGCACATTC ATATGAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46818165	NES10862800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33475739					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818165	NES10862800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17903753 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	1112 bp distal
Rr573862	regulatory region 573862	1195 bp distal