rs33475240 SNP Detail

Summary

• ID
  rs33475240
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17851483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA ATTTCTATAT TGAGTCATAT
  K
  TGCAATGGAA AAAGTAATAG ACAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46817790	NES10864842	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G	G	G		T	G	G	T		G
ss134653815	ENSMUSSNP3843101	ENSEMBL	ENSEMBL_Sanger	f	SNP						G
ss320673729	CHEV_3_17697319	CHEVERUD	SCREENING_POP	f	SNP								G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33475240					SNP	T	G	G	T	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817790	NES10864842	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17851483 () rs orientation: forward

Symbol	Name	Function Class
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	1549 bp downstream
Mir124b	microRNA 124b	1578 bp upstream
Rr573852	regulatory region 573852	404 bp proximal
Rr573853	regulatory region 573853	1107 bp proximal
Rr573854	regulatory region 573854	1269 bp proximal
Tssr28489	transcription start site region 28489	1573 bp downstream