rs33475235 SNP Detail

Summary

• ID
  rs33475235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17850969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGATAT TAGTTAACTT
  ACAAATAAAA ACCTTGAAAT ACGGAAAGAC AGGCTAAACA GTATTTTGCT GAAACCATCC
  ACTCTGACAA TCAGCTGATT TGGCCAGAAA CCCGAGTAGT TAACAAAATG TGCTAGAGAG
  AGATTAAATA GATTTTTTTT CCTCTTAAAT CACAATCTTG AAAAGAGAAA CACACGGTTT
  Y
  CAGTTGAGGA TCTTATCTCA GATATGGTCA CCAAAGATAC CTCTCAAAGG ACCCTAGAGT
  GTGCCTCAAA ATATATTTAA AAGGTTCTGA CTGAGGTTGA TTTAGTGACC AGAGCAGGCA
  GGAGTAGAGA AGCCTGCAAC CACTCTCGTG GCTCTCAGCA AGGCTTTCTG TGGGACAGCT
  TTCCTTACTG AGTTCTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817784	NES10864840	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33475235					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817784	NES10864840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17850969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	1787 bp distal
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	1035 bp downstream
Mir124b	microRNA 124b	1064 bp upstream
Rr573852	regulatory region 573852	918 bp proximal
Rr573853	regulatory region 573853	1621 bp proximal
Rr573854	regulatory region 573854	1783 bp proximal
Tssr28489	transcription start site region 28489	1059 bp downstream