rs33475131 SNP Detail

Summary

• ID
  rs33475131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102518186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTTCTGG GGACTCTTAG
  TAACTCTCCC AGTCGACATT GAGATGAAAA CCAGACAAAC AGCTAAAAGG ACAAAAAGAA
  CATGAGCTTG GATCATACCA TCTGAGGCAG CTGCTTCCCC CAGGCAGCCC TCCTAGCTTT
  CATGCGGCTG ATCTGTAAAA GAGTTGGTGA CAATGTCTGC CGAATAGGGT TGTTCAGAGG
  W
  TGGGAGTACC CTGAACAGCC ACAGAAGGAC CAAGGTACCT GGCACGAGGC GAGACTCTGT
  GGGTAACAGG CTTTCTAGAA CCAGAAAGGG TTCCTAGAAA AAGCAAGGTC AGAACAGGGA
  CTCCCTCAGA GGGAGTCTTG CCGGGGCCAC CCGAGCCTGA GTCCTTCTAT TGACAGCCTT
  AGGGAAGGTA AAATCAACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46818629	NES10719897	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33475131					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818629	NES10719897	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102518186 () rs orientation: forward

Symbol	Name	Function Class
Gm64453	predicted gene, 64453	within coordinates
Rr582246	regulatory region 582246	126 bp proximal