rs33475128 SNP Detail

Summary

• ID
  rs33475128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102518175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATATGAA CGCGGTTCTG
  GGGACTCTTA GTAACTCTCC CAGTCGACAT TGAGATGAAA ACCAGACAAA CAGCTAAAAG
  GACAAAAAGA ACATGAGCTT GGATCATACC ATCTGAGGCA GCTGCTTCCC CCAGGCAGCC
  CTCCTAGCTT TCATGCGGCT GATCTGTAAA AGAGTTGGTG ACAATGTCTG CCGAATAGGG
  Y
  TGTTCAGAGG TTGGGAGTAC CCTGAACAGC CACAGAAGGA CCAAGGTACC TGGCACGAGG
  CGAGACTCTG TGGGTAACAG GCTTTCTAGA ACCAGAAAGG GTTCCTAGAA AAAGCAAGGT
  CAGAACAGGG ACTCCCTCAG AGGGAGTCTT GCCGGGGCCA CCCGAGCCTG AGTCCTTCTA
  TTGACAGCCT TAGGGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46818626	NES10719895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33475128					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818626	NES10719895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102518175 () rs orientation: forward

Symbol	Name	Function Class
Gm64453	predicted gene, 64453	within coordinates
Rr582246	regulatory region 582246	137 bp proximal