rs33473856 SNP Detail

Summary

• ID
  rs33473856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66088593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AAGAACAAAA TGTTCTTGTT
  R
  GATAAATGGG ACTGGTGATT AGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45282829	mCV27577140	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A	A
ss146716558	ENSMUSSNP5064736	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss320323729	CHEV_2_66096306	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33473856					SNP	G	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66088593 () rs orientation: forward

Symbol	Name	Function Class
Rr397014	regulatory region 397014	1459 bp downstream
Rr558173	regulatory region 558173	1668 bp distal
Rr558174	regulatory region 558174	1833 bp distal
Rr558175	regulatory region 558175	1142 bp distal
Rr558176	regulatory region 558176	1173 bp distal
Tssr24377	transcription start site region 24377	1604 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	1632 bp upstream