rs33473661 SNP Detail

Summary

• ID
  rs33473661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17902697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAAATTAA GTCTCTGATA AGGACCTCTT TCTCAAATAA
  AGCTAGCCAT GATCTGCCTC CACATATAGC TGCTTCCTTA GAGTCTGGAT GCAGATCAAT
  Y
  CTAAATTTAA TCAGATTCTC ATTATTTATA TATGTATCTT ACCTTATGTT AGATGTAAGG
  GCCTTGGCTT GCTCCTGCCT TTATCCTGTG AAGTGACTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46818141	NES10862969	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	C	T	T		T	T		C
ss134654124	ENSMUSSNP2017904	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320673844	CHEV_3_17748533	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33473661					SNP	T	T	C	T	T	T	C	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818141	NES10862969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17902697 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	56 bp distal
Rr573862	regulatory region 573862	139 bp distal