rs33472887 SNP Detail

Summary

• ID
  rs33472887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17901506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGGAT TTCTCCACAA
  TTATATACTA GAAGAATCAT TGATTCTCAT ATGTAGCAAT CTATTGTTAA GGGCTCTTTT
  GCAGGGGGAC ATGTTTGGTT TATGCAACTT CTGGGTGTAG ACAGATAGCA AACATTCCAT
  ATTTTTGGAA ATGTATTTTC TAGCACTACT CTAGCCTTAC TATGTGGCCT CACCTTGAAT
  Y
  GTGAAACTAT CACATGATTC AGATCCTTCA AGCAGAAAAC TGTGCTTGAA GCTGATTTTG
  TTTTGTTCAA ATGGAACCCA GATTCTAGGT ACATAACGAT GCACCCTGCA CCCCGGTGTT
  ATTATCAGCA TATCATGGCT TTGATGATGA GAGAGAGCAT GTTCAAGTAC ATTCCATTCC
  TCCCTGTTTT AATGTCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46818126	NES10862961	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33472887					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818126	NES10862961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17901506 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	154 bp proximal
Rr573862	regulatory region 573862	1031 bp proximal