rs33472884 SNP Detail

Summary

• ID
  rs33472884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17901290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCTTTC TTCTCTAAAC
  AAGCTCTGCT TTTAGGCAAA AAGCAGAGTT CAGGCAGTCT CTTCCTGTTT TCACTGACTA
  TCGCACATCT TCAGCTCAAA ATAACCCTCA TGACAAAGTT ACATATTTTA GGGTGGCATA
  TTTGAAAATC TTATGTCCAT AAAACTCCTT CTTAGCTTGG GAGCTTGCTG GAAGGCCAGA
  R
  TCTTTCTAGT CACAGCACAG AGGATTTCTC CACAATTATA TACTAGAAGA ATCATTGATT
  CTCATATGTA GCAATCTATT GTTAAGGGCT CTTTTGCAGG GGGACATGTT TGGTTTATGC
  AACTTCTGGG TGTAGACAGA TAGCAAACAT TCCATATTTT TGGAAATGTA TTTTCTAGCA
  CTACTCTAGC CTTACTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46818123	NES10862959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33472884					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46818123	NES10862959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17901290 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	370 bp proximal
Rr573862	regulatory region 573862	1247 bp proximal