rs33467316 SNP Detail

Summary

• ID
  rs33467316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121127678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA AAGAAAAGGG AGTTGGAGTC
  R
  CCGAAGAGGG CTCCAGGGAA CGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45282202	mCV23082167	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147383163	ENSMUSSNP5922824	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320482570	CHEV_2_121122933	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33467316					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121127678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14978	predicted gene 14978			1189 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1899 bp downstream
Rr563799	regulatory region 563799			1733 bp distal
Rr563800	regulatory region 563800			1200 bp distal
Rr563801	regulatory region 563801			699 bp distal
Rr563802	regulatory region 563802			309 bp proximal
Tssr19740	transcription start site region 19740			1711 bp downstream
Tssr19741	transcription start site region 19741			1395 bp upstream