rs33467213 SNP Detail

Summary

• ID
  rs33467213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102376624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAAAACC GACAGAAGCC
  CTAGGACCCC AGATCTAGAA ACACGCAGGG AGCACATACA GACACAGTTC CATCTACAGT
  TTCCAAGGGA CCAGCTCTCC TGGGAGGCCC CTGCAATGCC AGTGCTAAGG CTGGCAGTGG
  GAGTGGGAGT TGGGGTAATC TGAACACCTA AGGTCCTCTT CCTTTGACCT CAGGCAGATA
  Y
  ACCTCTGTCT TGACATTCTA GTTAATTCTG CTTCTGCCTG GTTTCAGAGC AACCCCTGGC
  ACTGGCCAAT CCAGGAGTTT CCGGTGTTGT GGGTGTTCTC AGTGTTCCTT CAGCTCTCAG
  ATTTGCAGAG ATAGCAACAC CTGATATCCT GGCCACCAAA GAAGACTAAG TCACCCCAGG
  AGGCTAGCAA GGCAGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46816895	NES10725485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33467213					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816895	NES10725485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102376624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	476 bp proximal
Ngf	nerve growth factor	611 bp upstream
Rr582236	regulatory region 582236	358 bp proximal
Rr582237	regulatory region 582237	631 bp proximal
Tssr30928	transcription start site region 30928	327 bp upstream
Tssr30929	transcription start site region 30929	590 bp upstream
Tssr30930	transcription start site region 30930	610 bp upstream