rs33465475 SNP Detail

Summary

• ID
  rs33465475
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102375246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGGAT GGATGGATTA
  TTTGACACCC ACAAGTGGCT ATCACCATAT CAGGTCCCTG TGCCAGGTCC TGGGGAGACC
  AATAGTGTGG TAGGACCTAA TAATCAAGCC ATCATGGGAA CAATTGTGGC AGCAGGTGGC
  AGCCATCTCC CAGTACACAG CAGAGTAAAC TCGGTAAATG ATGATTGCTG TTTATATATT
  S
  ATACTTGGTT AAGATCCTTC AAATTCAGGG ACAGAAACAG ATCTAGTTAG AGCTAGCAAT
  GAACTTTTAT CAAGACGTGT AAATATGAAC AACAATTTGG GGGCAGGACA GCTGGGCTTA
  GATCTTACTC ACTTTGCTTT TTAAAATTTC TTCTTTTGGA AAAAACACAA GTGATTGAAA
  TCCTTCTGTC CTTCAAGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46816865	NES10725458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33465475					SNP	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816865	NES10725458	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102375246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1854 bp proximal
Ngf	nerve growth factor	1989 bp upstream
Rr582235	regulatory region 582235	1043 bp distal
Rr582236	regulatory region 582236	1736 bp proximal
Tssr30928	transcription start site region 30928	1705 bp upstream
Tssr30929	transcription start site region 30929	1968 bp upstream
Tssr30930	transcription start site region 30930	1988 bp upstream