rs33464694 SNP Detail

Summary

• ID
  rs33464694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164249732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAATAAT GCATTAACGG
  TTTCACTCTG GGAGAGGGGA CACTAAATCA TGATTCTTTA AAAATTTATG CCACCTTGAG
  ACACTTTTAA GACAGTGAAA ATGATGTTAT GTGTTCCCAG GTTCTTCTGT CCTCCACCCT
  GTGTCTACCT CGCGGGTCCT GGCTGGAGGG TGAAGCCAAT GCAAGACCAA GGTGAGAGTG
  Y
  CCTGACGGGC TGTTGCTCGG TTCTGCAGGA AGGACCAACT GCCTCAGCAG GGCCCGGGAG
  CCCAGACGGT TGCAGGCGCA GTCTCGCTGC GCCCTCTGGC GGCAAGAACT AAGTTTGACC
  CGCACCTGAG CTTCCCCCAG ACTTCCAGGG TTTAATTCCC GTCCTTTTTC AGCCCTCCAA
  TCTGCGGAGA CCGGGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45281084	mCV23181615	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33464694					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164249732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			30 bp proximal
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			115 bp distal
Rr569602	regulatory region 569602			86 bp proximal