rs33464592 SNP Detail

Summary

• ID
  rs33464592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102375218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCAGGC TGAGCTGTTA
  TGAAAATCAA CCCAGGATGG ATGGATTATT TGACACCCAC AAGTGGCTAT CACCATATCA
  GGTCCCTGTG CCAGGTCCTG GGGAGACCAA TAGTGTGGTA GGACCTAATA ATCAAGCCAT
  CATGGGAACA ATTGTGGCAG CAGGTGGCAG CCATCTCCCA GTACACAGCA GAGTAAACTC
  R
  GTAAATGATG ATTGCTGTTT ATATATTCAT ACTTGGTTAA GATCCTTCAA ATTCAGGGAC
  AGAAACAGAT CTAGTTAGAG CTAGCAATGA ACTTTTATCA AGACGTGTAA ATATGAACAA
  CAATTTGGGG GCAGGACAGC TGGGCTTAGA TCTTACTCAC TTTGCTTTTT AAAATTTCTT
  CTTTTGGAAA AAACACAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816862	NES10725455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33464592					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816862	NES10725455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102375218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13626	CpG island 13626	1882 bp proximal
Rr582235	regulatory region 582235	1015 bp distal
Rr582236	regulatory region 582236	1764 bp proximal
Tssr30928	transcription start site region 30928	1733 bp upstream
Tssr30929	transcription start site region 30929	1996 bp upstream